Genotyping of this set with the SNP array resulted in generation of genotyping data for 58,233 SNPs on 297 genotypes as QC for allele call failed for three samples. Upon identifying the polymorphic SNPs separately for the diploid species genotypes and tetraploid species genotypes, 40,714 polymorphic SNPs were identified on a panel of 36 wild genotypes while 9,312 polymorphic SNPs in the set of 264 cultivated tetraploid genotypes. Comparison of SNPs identified in the above two sets resulted in the identification of 5,625 common SNPs (Table 2).
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